PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007627.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 401aa    MW: 45674.8 Da    PI: 5.2638
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007627.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS150.12.1e-46263982374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL ++Aea + g++ l + +L+ +se +sp g++++Rla+ + +      ++      + l+      ++ ++  aa+k+f 
  Rmu_sc0007627.1_g000001.1  26 RHLLEAFAEAKEYGQKDLEEVILSCISEKVSPIGESFERLAFNLCQEVVDEHQQ----GGDYLKQ-----ESLKNFEAAFKVFI 100
                                79999************************************9866544444443....3333322.....236788899***** PP

                       GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetge 163
                                + +P+ +f+h +aN+aIlea+  e e++Hi+Dfd+ +G+Q   L++aLa+R +   +l++T+++ +e++      + + eet++
  Rmu_sc0007627.1_g000001.1 101 QNFPYARFAHYVANSAILEAIPAEaEAIHIVDFDMREGVQLSQLIEALAQRFK---TLKVTAIKWEEEEsdcapPHGRFEETKK 181
                                *********************99989*************************66...5******998877889999********* PP

                       GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl......... 234
                                +L++ A+++g++++ + +   +++dl +e  + k+    +E la n++++l ++ +    ++ +  e L+l k+l         
  Rmu_sc0007627.1_g000001.1 182 QLQNHARSFGLNLKVEEV---AMQDLVTEIKKAKKrgggKEFLAFNCMVSLPHMRR--RRSRGHVMEYLRLAKELansgnsktt 260
                                ****************98...444442222222334577**************983..33333467777777665333322222 PP

                       GRAS 235 sPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlek 314
                                ++ ++++ + + +++  n++sF   f e l +y al++s+e ++p++  e+ri +E  ++++ +++    ++     +  +++ 
  Rmu_sc0007627.1_g000001.1 261 KSGIITFGDGDaCERlgNHSSFSSFFNENLVHYQALLESMELNFPSHLaEARIAMECIFIAPFVSSQAWFQKWTEM-KDCHVQP 343
                                788*******97666799***************************98779********999999999888888744.4445888 PP

                       GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                                W      +G++  +ls+++ ++ak ++    s g r+e  + +++vl W++ pLv vS W+
  Rmu_sc0007627.1_g000001.1 344 W------FGLEGRSLSKENLMEAKEIVGDERSYGIRIEgLNGNEMVLEWRGTPLVRVSTWE 398
                                8......8******************************44567888**************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    
MDSTSIQSPL NLPREEEGIE NQLSIRHLLE AFAEAKEYGQ KDLEEVILSC ISEKVSPIGE  60
SFERLAFNLC QEVVDEHQQG GDYLKQESLK NFEAAFKVFI QNFPYARFAH YVANSAILEA  120
IPAEAEAIHI VDFDMREGVQ LSQLIEALAQ RFKTLKVTAI KWEEEESDCA PPHGRFEETK  180
KQLQNHARSF GLNLKVEEVA MQDLVTEIKK AKKRGGGKEF LAFNCMVSLP HMRRRRSRGH  240
VMEYLRLAKE LANSGNSKTT KSGIITFGDG DACERLGNHS SFSSFFNENL VHYQALLESM  300
ELNFPSHLAE ARIAMECIFI APFVSSQAWF QKWTEMKDCH VQPWFGLEGR SLSKENLMEA  360
KEIVGDERSY GIRIEGLNGN EMVLEWRGTP LVRVSTWENQ S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-15GRAS family protein