PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007717.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ARF

Protein Properties

Length: 754aa MW: 83039 Da PI: 4.7566

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007717.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.8	4e-13	6	86	34	99
SEEEEEETTS-EEEEEE...................EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliy.................rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++l+++d++ ++W++++iy ++++r++lt+GW+ Fv ++L++gD+v+F ++++ +l+v+v+r+ Rmu_sc0007717.1_g000001.1 6 QELVVRDLHDNTWTFRHIYrdyyyiflehilflslhVGQPKRHLLTTGWSLFVGTKRLRAGDSVLFI--RDEKSQLLVGVRRA 86 48*******************************999999**********************..4577778***97 PP
2	Auxin_resp	113.4	2.2e-37	111	194	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv+++ k++kal+ +++svGmRf m+fete+s +rr++Gt+v +sd+dp+rWp+SkWr+L+ Rmu_sc0007717.1_g000001.1 111 AAHAAANRSPFTIFYNPRACPSEFVIPLVKFQKALYgTQLSVGMRFGMMFETEESGKRRYMGTIVNISDFDPLRWPGSKWRNLQ 194 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MQPPTQELVV RDLHDNTWTF RHIYRDYYYI FLEHILFLSL HVGQPKRHLL TTGWSLFVGT 60 KRLRAGDSVL FIRDEKSQLL VGVRRANRQQ TTLPSSVLSA DSMHIGVLAA AAHAAANRSP 120 FTIFYNPRAC PSEFVIPLVK FQKALYGTQL SVGMRFGMMF ETEESGKRRY MGTIVNISDF 180 DPLRWPGSKW RNLQVEWDEP GCCDKQNRVS SWEVETPESL FIFPSLTSSL KRPFHSGYLG 240 AETEWANMIK RPFIRVPEIG NMNSFPYPMS NLCSEQLVNM LLKPQVSQAG TLSALQQESA 300 GNGGPLEDMQ AMQAKMNQKN MVYCSESMSL QSQNPSQLNT TAKFGSQTPV GVNTDKPKLE 360 PDLSTDRLSQ LSSSGQGNEE KLASGIAGSP YNNACVNPNQ GQLQASPRAM QQPMESLLYH 420 SQQTDLAQSD FNSANGSLPS LDNDECMFYQ PFAGILRSPG PLSAYGLQDC ASVLTEANNF 480 SPTSMGQEMW DNSLSRLLPQ VDQLTSSHQD PSTFNSIPNS GSLRDLSDES NNQSGVYGCP 540 SVDVGTGVGN IVADPSVTST IMDEFSKLKH ADFQNPSECL VGNLSSSQDL QSQITSASLG 600 DSHAFSRQEL ADNSGGTSSS NVDLDESSLL QNSWHQVVPP VRTYTKVQKA GSVGRSIDVT 660 SYTNYEELCS AIECMFGLEG LLNDPRGSGW KLVYVDYEND VLLVGDDPWE EFVGCVRCIR 720 ILSPTEVQQM SEEGMKLLNS AAALQGIGMN TTVS

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MQPPTQELVV RDLHDNTWTF RHIYRDYYYI FLEHILFLSL HVGQPKRHLL TTGWSLFVGT  60
KRLRAGDSVL FIRDEKSQLL VGVRRANRQQ TTLPSSVLSA DSMHIGVLAA AAHAAANRSP  120
FTIFYNPRAC PSEFVIPLVK FQKALYGTQL SVGMRFGMMF ETEESGKRRY MGTIVNISDF  180
DPLRWPGSKW RNLQVEWDEP GCCDKQNRVS SWEVETPESL FIFPSLTSSL KRPFHSGYLG  240
AETEWANMIK RPFIRVPEIG NMNSFPYPMS NLCSEQLVNM LLKPQVSQAG TLSALQQESA  300
GNGGPLEDMQ AMQAKMNQKN MVYCSESMSL QSQNPSQLNT TAKFGSQTPV GVNTDKPKLE  360
PDLSTDRLSQ LSSSGQGNEE KLASGIAGSP YNNACVNPNQ GQLQASPRAM QQPMESLLYH  420
SQQTDLAQSD FNSANGSLPS LDNDECMFYQ PFAGILRSPG PLSAYGLQDC ASVLTEANNF  480
SPTSMGQEMW DNSLSRLLPQ VDQLTSSHQD PSTFNSIPNS GSLRDLSDES NNQSGVYGCP  540
SVDVGTGVGN IVADPSVTST IMDEFSKLKH ADFQNPSECL VGNLSSSQDL QSQITSASLG  600
DSHAFSRQEL ADNSGGTSSS NVDLDESSLL QNSWHQVVPP VRTYTKVQKA GSVGRSIDVT  660
SYTNYEELCS AIECMFGLEG LLNDPRGSGW KLVYVDYEND VLLVGDDPWE EFVGCVRCIR  720
ILSPTEVQQM SEEGMKLLNS AAALQGIGMN TTVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19850.1	0.0	ARF family protein