PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007728.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 286aa    MW: 33139.9 Da    PI: 9.953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007728.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.7e-1543123996
                                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                +vl++g l +p +f+e+++ k +   + +l++ s  sW+v l  ++ +g+++++kGW+eFv  n+L+ g+ vvF++ g+ +f  
  Rmu_sc0007728.1_g000009.1  43 SVLQKGKLKIPQEFCEKFEVKVPH--QCQLQTFS-GSWRVDL--KRIRGEFFFKKGWREFVVGNRLNLGEYVVFHYFGHAKF-- 119
                                78999*************655444..47777755.59*****..*******************************9997777.. PP

                                EEEE CS
                         B3  93 vvkv 96 
                                 v +
  Rmu_sc0007728.1_g000009.1 120 DVEI 123
                                5555 PP
2B3438.1e-14194278294
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                  ++ + +v+k   l  p++f++++ ++  ++++l++    + sW+v+ i+  ++s+   +++GW +Fvk+ngL+egD++ F+l
  Rmu_sc0007728.1_g000009.1 194 SVQMCQTHVTKGP-LLTPRSFMRNIYKP--KKVELQV---GNMSWDVNWIHlYQRSS--RFSGGWLQFVKQNGLQEGDICEFEL 269
                                5677777888777.555*****888533..4445554...55999999987533333..489*********************9 PP

                                -SSSEE..EE CS
                         B3  85 dgrsefelvv 94 
                                ++ ++fe  v
  Rmu_sc0007728.1_g000009.1 270 IS-KTFEVAV 278
                                97.5554433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MSKAYSPPKR RGSQANSVMG SCSRRREDAD SEFPGFYKCV DYSVLQKGKL KIPQEFCEKF  60
EVKVPHQCQL QTFSGSWRVD LKRIRGEFFF KKGWREFVVG NRLNLGEYVV FHYFGHAKFD  120
VEIYGHNRCS KKSDRLHDVT TVDSDSDCEQ KNTEISLESE IECARKLGRR THFSRRAGAR  180
NLATISRSGN PCFSVQMCQT HVTKGPLLTP RSFMRNIYKP KKVELQVGNM SWDVNWIHLY  240
QRSSRFSGGW LQFVKQNGLQ EGDICEFELI SKTFEVAVMK VSIRKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.14e-12B3 family protein