PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007883.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 23632.6 Da    PI: 8.2025
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007883.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.93.7e-25957149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+ien   rqvtf+kRr+g+lKKA+ELSvLCda++ v+i+ss+gkl+e 
  Rmu_sc0007883.1_g000004.1  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIYSSHGKLFEL 57
                               68********************************************996 PP
2K-box54.74.5e-19841759100
                      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                + e+++   ++e++ Lk+eie Lq+ +  + G + +++sl eLq Le++Le  + ++Rs K+++ll++i+ l++ e  l  +nk
  Rmu_sc0007883.1_g000004.1  84 AMETQTLDAKKEINLLKQEIEILQKGLGYMFGGGAGTMSLDELQVLEKHLELWIYHVRSAKMDILLQEIQLLRNSEGILTAANK 167
                                5677888899************************************************************************** PP

                      K-box  93 aLrkklee 100
                                +L+ k+ee
  Rmu_sc0007883.1_g000004.1 168 YLQDKIEE 175
                                *****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLIYSS HGKLFELATK  60
GTMQGLIERY MKMKPAREPQ AETAMETQTL DAKKEINLLK QEIEILQKGL GYMFGGGAGT  120
MSLDELQVLE KHLELWIYHV RSAKMDILLQ EIQLLRNSEG ILTAANKYLQ DKIEENSGVT  180
NLIPMASDSP YPLTIPNDDI ISILGSNFGL N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.18e-82MIKC_MADS family protein