PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007952.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 265aa MW: 30182.5 Da PI: 8.9726

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007952.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F + L H r H Rmu_sc0007952.1_g000001.1 31 HVCKVCGKRFETGNGLGGHKRIH 53 79**********99999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MKSFQEIEND FHEDQDDRSR RHHKLQNSRD HVCKVCGKRF ETGNGLGGHK RIHNLLLPNK 60 KINKFKANEK VYHPSSRDYL KDVRRLQALS VSPSQSSSSS TFSSWCESSS SNLTESDSDL 120 EKSLPIWGRK DVRGRSSTCT RSTTTLIANQ TVTNKPREAA KIKTDETSWS DKNTKPKKMM 180 MRSNLEKSRK HVCEICYKEF PTGQALGGHK SSHYYYPGST AAATSIREVP GLDQVVSNED 240 EEASRPTISR ETFEFDLNEI PSEEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	1e-09	C2H2 family protein