PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008081.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 241aa MW: 26534.2 Da PI: 10.0758

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008081.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.7	2.7e-27	80	162	1	74
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.... 73 a+g+k rhsk++ k+g+Rd RvRl ++ ++f+dLqd+L +d++s +++WL++++k+ai+el + +++s+ Rmu_sc0008081.1_g000008.1 80 ATGRKNRHSKVYNKKGPRDHRVRLATHTTIQFYDLQDRLRYDRPSMAVDWLIKKSKAAIDELSSWnpnsisvQTTSS--Ltvli 161 589***********************************************************999444333211111..11122 PP TCP 74 e 74 + Rmu_sc0008081.1_g000008.1 162 S 162 1 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
LSDHSSPSRS ASRSLPCSTA TLSRYLPAER LLSLNNSAAL IYADESLIIS TPAGSSTGIR 60 TASSSTASEI VEARGHILKA TGRKNRHSKV YNKKGPRDHR VRLATHTTIQ FYDLQDRLRY 120 DRPSMAVDWL IKKSKAAIDE LSSWNPNSIS VQTTSSLTVL ISATQDKQNA NLHFSMVEAS 180 SSLFANRRGA MVGSSEVAEL VNQNSSNFLQ VRMVWRPKLM LIFVCLQLPL MEVGLEAEVV 240 D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	3e-34	TCP family protein