PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008192.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 584aa MW: 66334.4 Da PI: 6.5928

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008192.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.6e-29	132	217	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+ Rmu_sc0008192.1_g000003.1 132 RWPRQETLTLLEIRSRLDYKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFR 213 8*********************************998***************************98..55667* PP trihelix 84 qlea 87 qlea Rmu_sc0008192.1_g000003.1 214 QLEA 217 85 PP
2	trihelix	53.8	5e-17	423	497	2	72
trihelix 2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 W++ e+ +Li++r +me+r+++ g+ ++ lWee+++km+ g+ers Ckekwe++n k ke +k++ Rmu_sc0008192.1_g000003.1 423 WPECEINKLIQLRGSMESRFSTnqrgGCVEERLWEEIAAKMSCLGYERSGMVCKEKWESINYVRKCSKELFSKKR 497 *******************8444458*****************************9855444444333332 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MEMEDQYGLG DLRQLMNGTG RSHFPAIQTP TELFPSSHHH RPQLLAPAHH HHHQQQQQHP 60 YEIMMMGRLQ TAHDIMPRGI HEFRSSDSAG GCGGGGGACT NNTVAATSSL SGGGGLEAEG 120 GGCLGGDVGS GRWPRQETLT LLEIRSRLDY KFKEANQKGP LWDEVSRIMC EEHGYQRSGK 180 KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ETSNNIAVSS LPPDQSHFLG 240 NNNINNNNNT FRYQAQPSHQ DTTTATTYQS TQSVSNSSDF EDSSSSEDND GSAIAPMDDE 300 VLEMKRTRKR RGWKVKIKEF IDVQMRKMME KQEEWLEKLM GTLEQKERER VLREEEWRKQ 360 EAGRVEREQQ FWAKERAWIE ARDKALMDAL QKLTGSSTSH EVKTSSSTPD HDHEDIVSEQ 420 ETWPECEINK LIQLRGSMES RFSTNQRGGC VEERLWEEIA AKMSCLGYER SGMVCKEKWE 480 SINYVRKCSK ELFSKKRKEN NSRSSSCYFG NNESNSSLYS SQGGVYATCE MNNHEQGNDG 540 SPSNNPNVGN AAVVNDTCFP FLMGEGDNLW ENYGLKLSKG SQNQ

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MEMEDQYGLG DLRQLMNGTG RSHFPAIQTP TELFPSSHHH RPQLLAPAHH HHHQQQQQHP  60
YEIMMMGRLQ TAHDIMPRGI HEFRSSDSAG GCGGGGGACT NNTVAATSSL SGGGGLEAEG  120
GGCLGGDVGS GRWPRQETLT LLEIRSRLDY KFKEANQKGP LWDEVSRIMC EEHGYQRSGK  180
KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ETSNNIAVSS LPPDQSHFLG  240
NNNINNNNNT FRYQAQPSHQ DTTTATTYQS TQSVSNSSDF EDSSSSEDND GSAIAPMDDE  300
VLEMKRTRKR RGWKVKIKEF IDVQMRKMME KQEEWLEKLM GTLEQKERER VLREEEWRKQ  360
EAGRVEREQQ FWAKERAWIE ARDKALMDAL QKLTGSSTSH EVKTSSSTPD HDHEDIVSEQ  420
ETWPECEINK LIQLRGSMES RFSTNQRGGC VEERLWEEIA AKMSCLGYER SGMVCKEKWE  480
SINYVRKCSK ELFSKKRKEN NSRSSSCYFG NNESNSSLYS SQGGVYATCE MNNHEQGNDG  540
SPSNNPNVGN AAVVNDTCFP FLMGEGDNLW ENYGLKLSKG SQNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-106	Trihelix family protein