PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0008296.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 404aa    MW: 45560.9 Da    PI: 6.7904
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0008296.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.97.2e-134344031373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lL++cAea+s++++   ++l+++ +  +s +g+p+qRl ay++e+L ar   s+s+ y+al+++e +   s++ l++++++
  Rmu_sc0008296.1_g000004.1  34 LRQLLIACAEALSDNNMDGFEKLIEKARGAVSISGEPIQRLGAYMVEGLVARKEASGSNFYRALRCREPE---SDDLLSYMHIL 114
                                689******************************************************************9...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                +e++P+lkf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+
  Rmu_sc0008296.1_g000004.1 115 YEICPYLKFGYMAANGAIADACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEAVGRRLK 198
                                ******************************************************************999999************ PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                 + e++++p+ef+  v     d+++++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+
  Rmu_sc0008296.1_g000004.1 199 AISEKFNIPVEFHG-VPVFAPDVTPDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRIVKSLSPKVTTLVEQESNTNT 281
                                **************.688899*************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                ++Fl+rf+e+l+yy a+f+s++++lpr+s+eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls++++
  Rmu_sc0008296.1_g000004.1 282 TPFLNRFIETLDYYLAMFESIDVTLPRNSKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVN 365
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                + +++llr ++ + y++ee++g+++lgWk+r+Lvs+SaW
  Rmu_sc0008296.1_g000004.1 366 SVIRSLLRCYS-EHYKLEEKDGAMLLGWKERNLVSASAW 403
                                *******9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MQRQTSFVSG HRQSEKRHKV LDEASPQGFL ADNLRQLLIA CAEALSDNNM DGFEKLIEKA  60
RGAVSISGEP IQRLGAYMVE GLVARKEASG SNFYRALRCR EPESDDLLSY MHILYEICPY  120
LKFGYMAANG AIADACRNED RIHIIDFQIA QGTQWVTLLQ ALAARPSGAP HVRITGIDDP  180
VSKYARGDGL EAVGRRLKAI SEKFNIPVEF HGVPVFAPDV TPDMLDVRPG EALAVNFPLQ  240
LHHTPDESVD VNNPRDGLLR IVKSLSPKVT TLVEQESNTN TTPFLNRFIE TLDYYLAMFE  300
SIDVTLPRNS KERINVEQHC LARDIVNVIA CEGKERVERH ELFGKWKSRL TMAGFRQYPL  360
SSYVNSVIRS LLRCYSEHYK LEEKDGAMLL GWKERNLVSA SAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein