PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0008308.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 223aa    MW: 25200.9 Da    PI: 5.0356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0008308.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-105298455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               ++ ++Er+RR+++ +++ +Lr+l+P       + ++Ka+i+e  + YI +Lq
  Rmu_sc0008308.1_g000004.1 52 KNLKAERKRRAKLSDRLLKLRSLVPII-----TNMNKATIVEDSITYIYELQ 98
                               56689*********************6.....58**************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MLVDHYLNDM EFVGSALDEL CLSPDQEGSS QGGRMGRRRY NDQEDDSIYK SKNLKAERKR  60
RAKLSDRLLK LRSLVPIITN MNKATIVEDS ITYIYELQKN VNMLQDQLFE MEALSSLEVP  120
EPKPRKEEID AAEEMKKYGI QADVSVTQID GNKLWIKAVL AKKRGGFTKL IEAMTEFGFE  180
LTDTSVTTSN GAMLVSSCVI GFHCDTHAVL QTRELMLDII NGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.11e-37bHLH family protein