PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008451.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YB

Protein Properties

Length: 398aa MW: 44151.4 Da PI: 7.5018

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008451.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	28.1	4.8e-09	265	311	49	95
NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++d c+ kr+tin dd+l al ++ f +++eplk+ l+ re ++ Rmu_sc0008451.1_g000003.1 265 PTNDICKGSKRQTINDDDVLKALEDIEFPEFIEPLKASLEGLREKNA 311 57899**************************************9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MHTQCALSGL VRQRAICLIK WTQPPSGRMK LSVARIIYVW QHSGKVVLFV MMLLQYRAIF 60 PAEEIWNTIQ EPSQNMLTPA QAASSEANRA TMKANKTKDI ILMTRLMNDA LQNEYLNEEN 120 PGKLWNVLDY NSEAFRIKSL MESCGKNITD TMFIKKTLST FLASALMISK NYRIDPPLTH 180 NGVGSSPLMN SGDHINLSLS LPPSSPFSTV VEAQSEAIRI ASSLTLKSVR HQGSQFVVMQ 240 HGFDSNKDSD TVVDAQIGGH AMGTPTNDIC KGSKRQTIND DDVLKALEDI EFPEFIEPLK 300 ASLEGLREKN AGKKAGTSKA KEAKTKEAKT KEVKKKRKLE EPPPKEEEEN QDEDGGDSAS 360 ESSSKERTIS TSFVLLFLSG CSSELNRSSC LLEWFTLA

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MHTQCALSGL VRQRAICLIK WTQPPSGRMK LSVARIIYVW QHSGKVVLFV MMLLQYRAIF  60
PAEEIWNTIQ EPSQNMLTPA QAASSEANRA TMKANKTKDI ILMTRLMNDA LQNEYLNEEN  120
PGKLWNVLDY NSEAFRIKSL MESCGKNITD TMFIKKTLST FLASALMISK NYRIDPPLTH  180
NGVGSSPLMN SGDHINLSLS LPPSSPFSTV VEAQSEAIRI ASSLTLKSVR HQGSQFVVMQ  240
HGFDSNKDSD TVVDAQIGGH AMGTPTNDIC KGSKRQTIND DDVLKALEDI EFPEFIEPLK  300
ASLEGLREKN AGKKAGTSKA KEAKTKEAKT KEVKKKRKLE EPPPKEEEEN QDEDGGDSAS  360
ESSSKERTIS TSFVLLFLSG CSSELNRSSC LLEWFTLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	339	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-11	NF-YB family protein