PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008866.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 363aa MW: 40246.7 Da PI: 6.5128

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008866.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103.2	1.4e-32	94	201	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k ltpsdv+k++rlv+pk++ae++ gg+ ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++ Rmu_sc0008866.1_g000008.1 94 FEKPLTPSDVGKLNRLVIPKQHAERYfplgggnggesGGE--KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKR 175 99***************************998865444..6679********************************** PP --TT-EEEEEE-SSSEE..EEEEE-S CS B3 74 LkegDfvvFkldgrsefelvvkvfrk 99 L++gD+v+F++ ++++++l+++++r+ Rmu_sc0008866.1_g000008.1 176 LDAGDVVLFERRRNDSERLFIGWRRR 201 ******99889999****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MSLNHFSSSE LQETQWWNNS TTQQNQQQPP EFTMDTFHPQ LYQNYQPGWL GSQIAQQPPT 60 LNFNLNHQHN DAADRELQQP ELQIDMGDDK ETMFEKPLTP SDVGKLNRLV IPKQHAERYF 120 PLGGGNGGES GGEKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY VKEKRLDAGD 180 VVLFERRRND SERLFIGWRR RAAQESSGAG GGASNTSAQV SGSGGGGGAG AGVESGGSRA 240 GWTRIFYSAP QSYPAPHHHS VPYPPDYLQH AAAAAAGSPV QNQTPSSSSG GNSRILRLFG 300 VNLECQQQQD DESEPSTPDG SSLSSQGPTH HQFYPNPTNA YYGDHRDFTF SRDANPPMRN 360 RRG

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MSLNHFSSSE LQETQWWNNS TTQQNQQQPP EFTMDTFHPQ LYQNYQPGWL GSQIAQQPPT  60
LNFNLNHQHN DAADRELQQP ELQIDMGDDK ETMFEKPLTP SDVGKLNRLV IPKQHAERYF  120
PLGGGNGGES GGEKGLLLSF EDESGKCWRF RYSYWNSSQS YVLTKGWSRY VKEKRLDAGD  180
VVLFERRRND SERLFIGWRR RAAQESSGAG GGASNTSAQV SGSGGGGGAG AGVESGGSRA  240
GWTRIFYSAP QSYPAPHHHS VPYPPDYLQH AAAAAAGSPV QNQTPSSSSG GNSRILRLFG  300
VNLECQQQQD DESEPSTPDG SSLSSQGPTH HQFYPNPTNA YYGDHRDFTF SRDANPPMRN  360
RRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	2e-60	B3 family protein