PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008907.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 504aa MW: 56418.8 Da PI: 7.3165

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008907.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.4	6.3e-41	166	242	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ keyh+rh+vC++hsk++ v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa+hn+rrrk+q Rmu_sc0008907.1_g000005.1 166 TCQVHGCNMDLSSSKEYHKRHRVCDAHSKTAIVIVNGIEQRFCQQCSRFHLLVEFDDVKRSCRRRLAGHNQRRRKPQ 242 6**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MEPWSFGSEG KGFLLADEMD IPIDAFARST KAFLEWDNKT CFNFDKESVE SMEFMDLGLP 60 DTVREPCHGN QVVDVLSGVA GVGCNDSSNN TVASPTCLMT SSSSWGEGES GSKFSSPVYE 120 SSSQDSSLIA LKLGRLADSK YGQDSQHLKE RSKRARTKGP HYQTLTCQVH GCNMDLSSSK 180 EYHKRHRVCD AHSKTAIVIV NGIEQRFCQQ CSRFHLLVEF DDVKRSCRRR LAGHNQRRRK 240 PQLDTFDCKS RKWLQSYQGI GYLGTSLPKR TPFVFSDILP GGILYPEESN EYGHIKTEDE 300 STYSQCVTPI TNRPLPPNSF LQLHGLGKQH ASEVPSSGSE FSVFDSASHV QKASGASTYQ 360 GALSLLSAQS QSSIHSARNQ VATPLQIQRT HHGAGQINER PSTVKALEKY GRNRSFPCRI 420 NSMGTDQMDS VMISDSSHAV DFQLHTDRVF QESARFSHKY HLSPENGPTF DLLQLSSHFQ 480 RVEQERNFLQ VKHEQGDFYC FPQS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MEPWSFGSEG KGFLLADEMD IPIDAFARST KAFLEWDNKT CFNFDKESVE SMEFMDLGLP  60
DTVREPCHGN QVVDVLSGVA GVGCNDSSNN TVASPTCLMT SSSSWGEGES GSKFSSPVYE  120
SSSQDSSLIA LKLGRLADSK YGQDSQHLKE RSKRARTKGP HYQTLTCQVH GCNMDLSSSK  180
EYHKRHRVCD AHSKTAIVIV NGIEQRFCQQ CSRFHLLVEF DDVKRSCRRR LAGHNQRRRK  240
PQLDTFDCKS RKWLQSYQGI GYLGTSLPKR TPFVFSDILP GGILYPEESN EYGHIKTEDE  300
STYSQCVTPI TNRPLPPNSF LQLHGLGKQH ASEVPSSGSE FSVFDSASHV QKASGASTYQ  360
GALSLLSAQS QSSIHSARNQ VATPLQIQRT HHGAGQINER PSTVKALEKY GRNRSFPCRI  420
NSMGTDQMDS VMISDSSHAV DFQLHTDRVF QESARFSHKY HLSPENGPTF DLLQLSSHFQ  480
RVEQERNFLQ VKHEQGDFYC FPQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	8e-46	SBP family protein