PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0008967.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 373aa    MW: 41684.5 Da    PI: 4.577
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0008967.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34411322102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k++e++ed++++ ++sws+  nsf+v+d+++f++ +Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ 
  Rmu_sc0008967.1_g000010.1  41 FLTKTFEMVEDSSTDAIVSWSRARNSFIVWDSHQFSSILLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEG 115
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                F  g+++ll++ikr+++
  Rmu_sc0008967.1_g000010.1 116 FLGGQRHLLKTIKRRRH 132
                                **************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MEGVAVKEEI IACTVGSSSS SSSSLSPRPM EGLHELGPPP FLTKTFEMVE DSSTDAIVSW  60
SRARNSFIVW DSHQFSSILL PRYFKHNNFS SFIRQLNTYG FRKVDPDRWE FANEGFLGGQ  120
RHLLKTIKRR RHVSQSTHEG GGGACVELGQ YGLETELERL KRDRNVLRTE IVRLRQQQQN  180
SKELVLAMED RLQTTEKKQQ QIMNFLAKAL KNPSFIQNFA QKRELVGVGV EIGRKRRLTA  240
SPSVEDLQEV PTAHVLDMAA SQDQGELLTM ESDFESLFSA AALDNESSSD INGSNLTSIP  300
TSGGGKLGTV NETIWDHLWS DELIGGNPEE EVVVGNDSEI DVEVEDLVAD PSEWGEDLQD  360
LVDQMDFLIK PNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKTIKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-124HSF family protein