PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009637.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 305aa MW: 33896.9 Da PI: 7.5484

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009637.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	44.9	2e-14	237	261	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + ++G C+yGd+C+FaHg Rmu_sc0009637.1_g000002.1 237 KTELCNKWEESGACPYGDNCQFAHG 261 9***********************9 PP
2	zf-CCCH	24.4	5.2e-08	274	299	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt +Cr + GtC+yG rC+F H+ Rmu_sc0009637.1_g000002.1 274 YKTQICRMVLTRGTCPYGHRCHFRHS 299 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MQSKQAMETN SSAASPNSSA LSDSTNQPAA ASDFASSMYS SIFPQKFTLP SSLSLTPSTL 60 SDDDGDHHDD DCNTMHRLGQ AQLVLECEEL RNHLRDLNNE VDSLRRENAV LRSANTDLVK 120 LLSSPLALHN FLNASTYLNT FMADELKPLG VGVFSPRDGD EASDISPTSV IMERNRFNAD 180 RFSLPKSISV RSRGYKKVNP SFGANQLLKD GPARVPEEGS SGAMQVKVKA YNQGMLKTEL 240 CNKWEESGAC PYGDNCQFAH GVRELRPVMR HPRYKTQICR MVLTRGTCPY GHRCHFRHSL 300 NDQHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-63	C3H family protein