PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009638.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 400aa MW: 44473.8 Da PI: 6.8778

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009638.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.4	2.8e-53	19	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+++yL+ kv + + i+evd++++ePw+Lp +k +++ewyfFs rd+ky+tg r+nrat +gyWk Rmu_sc0009638.1_g000004.1 19 LPPGFRFHPTDEELITFYLASKVYNGAFCG-VDIAEVDLNRCEPWELPDVAKMGDREWYFFSLRDRKYPTGLRTNRATGAGYWK 101 79***********************877.34***********888889************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkdkev+s+ +g+l g+kktLvfykgrap+g+kt+Wvmheyrl Rmu_sc0009638.1_g000004.1 102 ATGKDKEVYSAsSGALLGMKKTLVFYKGRAPRGQKTKWVMHEYRL 146 *****9978889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MEEVMSELMG REELNEQGLP PGFRFHPTDE ELITFYLASK VYNGAFCGVD IAEVDLNRCE 60 PWELPDVAKM GDREWYFFSL RDRKYPTGLR TNRATGAGYW KATGKDKEVY SASSGALLGM 120 KKTLVFYKGR APRGQKTKWV MHEYRLDGDF SSYRHTCKDE WVICRIHNKS GDKKNPLQAQ 180 GQGEGQQSNF LQQVVEAASA SASSKTGCLP PLLECQSQTT HQNPSFLQSP SLLQIQENDL 240 MKSRNQLFQQ PSLSSSSSSS AAALHSMLFK SLLYSHQDQA GTGTSAPKQC KAEAANLSQF 300 QTPPLNAANF NYLMEKNHSH HQPNVPDSLL QFHHHPRNAL SFDDFHYYNG VLGLSTSATA 360 AVDAETSSAS IGGFNRAGFQ TMLDPLIKLP AAESWNLDIA

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MEEVMSELMG REELNEQGLP PGFRFHPTDE ELITFYLASK VYNGAFCGVD IAEVDLNRCE  60
PWELPDVAKM GDREWYFFSL RDRKYPTGLR TNRATGAGYW KATGKDKEVY SASSGALLGM  120
KKTLVFYKGR APRGQKTKWV MHEYRLDGDF SSYRHTCKDE WVICRIHNKS GDKKNPLQAQ  180
GQGEGQQSNF LQQVVEAASA SASSKTGCLP PLLECQSQTT HQNPSFLQSP SLLQIQENDL  240
MKSRNQLFQQ PSLSSSSSSS AAALHSMLFK SLLYSHQDQA GTGTSAPKQC KAEAANLSQF  300
QTPPLNAANF NYLMEKNHSH HQPNVPDSLL QFHHHPRNAL SFDDFHYYNG VLGLSTSATA  360
AVDAETSSAS IGGFNRAGFQ TMLDPLIKLP AAESWNLDIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-102	NAC family protein