PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009663.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 259aa    MW: 28287.1 Da    PI: 4.6216
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009663.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-1647107357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t+ ql++L+ l++   ++yp+ e+++e+  +l    ++++++V++WFqN +a e++
  Rmu_sc0009663.1_g000001.1  47 NRWTPTPAQLRILQGLYYDkgHKYPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKAHERQ 107
                                7****************9557************************************9996 PP
2Wus_type_Homeobox89.82.7e-2945108264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp Q++iL+ ly+ +G + P+ e+iq+i  +L+ yG+iedkNVf+WFQN ka erqk
  Rmu_sc0009663.1_g000001.1  45 TNNRWTPTPAQLRILQGLYYdKGHKYPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKAHERQK 108
                                579***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MEPRTLPLME LQTQQQMELQ AQQPTEEGGS TQAAGSSADT PIRPTNNRWT PTPAQLRILQ  60
GLYYDKGHKY PTPEQIQEIC LHLKPYGQIE DKNVFFWFQN LKAHERQKLK EFRNVRVGGS  120
LDLNFGSTSS TDDGRSIDLN FGSTGDDGSI DLTLGSCVGY GVDPYSFSPF NANTSTTSFG  180
TTGGQTFMEQ RGGDHQEVET LPLFPVHGED VLGNPKTTSE EGSAFGYYSG GSGGHNSGSP  240
VLLSSASIHP ELLTWFSIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-20WOX family protein