PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009727.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 157aa MW: 17252.3 Da PI: 8.2868

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009727.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.8e-44	14	112	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC +dCv+apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq Rmu_sc0009727.1_g000002.1 14 PCAACKFLRRKCMPDCVFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQ 97 7********************************************************************************* PP DUF260 85 qqleqlkaelallke 99 +q+ +l++el+++++ Rmu_sc0009727.1_g000002.1 98 RQVLRLQKELDATNA 112 ********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence
MASSSSYSSS CNSPCAACKF LRRKCMPDCV FAPYFPPEEP HKFANVHKIF GASNVSKLLN 60 EVLPHQREDA VNSLAYEAEA RIKDPVYGCV GAISVLQRQV LRLQKELDAT NADLLRYAGA 120 SCNRGTGRGS HHGQNSGLYS FSSPWSSTHD PYGDHRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-64	LBD family protein