PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009879.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 707aa    MW: 78109.2 Da    PI: 6.2039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009879.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.62.3e-1343427061374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalk 82 
                                lv+lLl+cAeav+++d  la+++L +l++ +s  gd+mqR+aa+fteAL+arla + ++  +al+p++ s+    s e l++++
  Rmu_sc0009879.1_g000008.1 342 LVHLLLACAEAVAKEDYMLARRYLHHLNQVVSALGDSMQRVAACFTEALSARLAATLTTNPSALAPKPFSPFPpnSLEILKIYQ 425
                                68*****************************************************99999999988888765455********* PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                + ++++P++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+      e+++etg+ L+
  Rmu_sc0009879.1_g000008.1 426 IVYQACPYVKFAHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARSGGAPFLRITGVGP----CLEAVKETGRCLT 505
                                *******************************************************************....************* PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                ++A +l+vpfef++ v ++ledl++++++ + gEalaVn v +lhr++    +l     ++L ++++  P++v++veqea+hn+
  Rmu_sc0009879.1_g000008.1 506 ELAISLHVPFEFHA-VGEQLEDLKPHMFNRRIGEALAVNTVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTLVEQEASHNG 582
                                **************.7*******************************9..44444....5************************ PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e  GFk+vpls +a+
  Rmu_sc0009879.1_g000008.1 583 PYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGAERTERHERLEKWRKIMEGKGFKSVPLSANAV 666
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Rmu_sc0009879.1_g000008.1 667 TQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 706
                                ***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    
MMMNSHCGSM GSIKSENSCS DFKPTSPNES TIMSEPPKKA TSTTTTALSS SDMMNHSTTS  60
LTPPSLNFPA LKFELEGDVE VESPDHSIWE SLFSEQFDTD FMVLSPVANT NNNLPNSPRT  120
FGYNGQAIQG QTSFSGCSPP RFGSPPLGAF SRDNSKGKGL SPLRRVFNSP VNYIQQEPEN  180
LQSLPPASIE DFLDDYQRDG FVAAYSDPNL NPTTTCTSKM SGGGSNLSSQ SYHNPMVSMD  240
CNMSTTMQNP SRFSRSVSET SLVTACNSQM TQESRGGGAY QQMGSNCSAP LSQQLMHERQ  300
QEKQHMQMHP QKQHHNNHNY NLMAPSLPPV APEPEQDSGL QLVHLLLACA EAVAKEDYML  360
ARRYLHHLNQ VVSALGDSMQ RVAACFTEAL SARLAATLTT NPSALAPKPF SPFPPNSLEI  420
LKIYQIVYQA CPYVKFAHFT ANQAIFEAFE SEERVHVIDL DILQGYQWPA FMQALAARSG  480
GAPFLRITGV GPCLEAVKET GRCLTELAIS LHVPFEFHAV GEQLEDLKPH MFNRRIGEAL  540
AVNTVNRLHR VPGNCLGNLL AMIRDQAPNI VTLVEQEASH NGPYFLGRFL EALHYYSAIF  600
DSLDATFPPD SAQRAKVEQY IFAPEIRNIV ACEGAERTER HERLEKWRKI MEGKGFKSVP  660
LSANAVTQSK ILLGLYSCDG YRMTEDKGCL LLGWQDRSIM AASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-98GRAS family protein