PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0009959.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 233aa    MW: 27023.5 Da    PI: 10.5249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0009959.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-17113160148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g+W++eEdell+++ + +G+  W+ I++  g++R++k+c++rw++yl
  Rmu_sc0009959.1_g000001.1 113 KGAWSAEEDELLIRYMRTHGMCKWRDIPQGAGLNRCEKSCRLRWRNYL 160
                                79*********************************************7 PP
2Myb_DNA-binding51.91.8e-16166210147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Rmu_sc0009959.1_g000001.1 166 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNSN 210
                                78999*****************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MQTPQLVQLL CYWICLFLMP QGHSIGLVHC GKRIQTNYVA VDCSVAFVKT HKEFHCFLCL  60
HVTLHFGGNI ASAGRKATKR IRSSGLKPSI YPDFQFQRKM VRKPCCNKDS VNKGAWSAEE  120
DELLIRYMRT HGMCKWRDIP QGAGLNRCEK SCRLRWRNYL RPDIVRGNIS DDEEDLIIRL  180
HKLLGNRWSL IAGRLPGRTD NEIKNHWNSN LRKRLLKKAP RNQSKAHHPR GEP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-55MYB family protein