PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0009988.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 252aa MW: 28299.9 Da PI: 10.6727

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0009988.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	56.3	1.3e-17	173	227	27	82
TCP 27 ecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 ++a++f+d+qd+LG+d++sk ++WL+++ak+ai+el ++++ ++++ sss+ a Rmu_sc0009988.1_g000017.1 173 HTAIQFYDVQDRLGYDRPSKVVDWLIKKAKAAIDELSPW-NPNSISVQTTSSSNDA 227 79**********************************999.3333233333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MRRLQPPHVT LPICTPLFHD PHGFSVIFSL HHHHRRTQQV MEDKTQRPES HPLHKPPTLE 60 SKETGATPRH HTRCTPPGAW TTAAPPCSAV GFSKLSRRKK NGGEPQQPPP PRNDVVPRCL 120 SIGFGDKDFF FLHLQRNQGG SRPHSKGHRL EGPPQQGLHR QRPQGPSRPA RPHTAIQFYD 180 VQDRLGYDRP SKVVDWLIKK AKAAIDELSP WNPNSISVQT TSSSNDADIR RAGLAEREPP 240 FLNSGGSEFF VC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	2e-18	TCP family protein