PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010008.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 608aa    MW: 68122.3 Da    PI: 7.9008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010008.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.72.1e-1172356061374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lL+ cA+a+++gd +  ++lL+r++++asp gd mqR+a +f+ +L+ar+a+s++++y+al +++ts    +++l+a++lf
  Rmu_sc0010008.1_g000006.1 235 LRTLLTVCAQAIAAGDERTGNNLLKRIRQHASPVGDGMQRMACCFADGLEARMAGSGTQIYRALITKPTS---AADVLKAYHLF 315
                                5789***************************************************************999...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                  ++P+ k+s++  N++I++  e+++r+HiiDf+i++G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa
  Rmu_sc0010008.1_g000006.1 316 LAACPFKKLSNFFSNKTIMNVSEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLA 399
                                ********************************************************************9*************** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                ++Ae+++vpfef++ +a++++++++e+L+++++E+l+Vn++++l +llde+v +es+rd vL+l+++++P+v ++   +  +++
  Rmu_sc0010008.1_g000006.1 400 NYAETFKVPFEFDA-IAQKWDTIQIEDLKLDRDEVLVVNSIYRLRNLLDETVVVESPRDIVLNLIRKMNPDVYILGVVNGAYSA 482
                                **************.7******************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                  Fl rf eal ++s+lfd+l++ +pr+  er+ +Ere++gre++nv+aceg+er+er et+++W+ r ++aG++++pl+++++
  Rmu_sc0010008.1_g000006.1 483 LFFLSRFREALFHFSTLFDMLDMCVPRDIPERMLIEREIFGREAMNVIACEGSERIERPETYKQWQVRNRRAGLTQLPLNQEIM 566
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                + ak  l+ ++ + + ++e+  +l++gWk+r ++++S+Wr
  Rmu_sc0010008.1_g000006.1 567 SIAKDRLHAYYHKDFVIDEDGRWLLQGWKGRIVYALSSWR 606
                                ***********888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    
LAADQNHESP DESHSLHSSC CSTTSTSTSS SIRDCDLREF KSLNVASQST SQSSHASSHG  60
TSNIVDGFVD SPVSTLRVPD FFNETDSIMQ FKKGFEEASK FLPNGNSLIV DLESNTLLLK  120
ELKADATDML VKVDQKNDSE YSSAGSRRKK HSYHDDVLLE GERSNKQSSV STESAVSPEM  180
FDMVLLNCGQ GESALREALQ NGTKKNKPQN GQSKGPSGGK SRGKKQGGKK DVVDLRTLLT  240
VCAQAIAAGD ERTGNNLLKR IRQHASPVGD GMQRMACCFA DGLEARMAGS GTQIYRALIT  300
KPTSAADVLK AYHLFLAACP FKKLSNFFSN KTIMNVSEKA TRLHIIDFGI MYGFQWPCLI  360
QRLSSRPGGP PKLRITGIDF PNPGFRPAER VEETGRRLAN YAETFKVPFE FDAIAQKWDT  420
IQIEDLKLDR DEVLVVNSIY RLRNLLDETV VVESPRDIVL NLIRKMNPDV YILGVVNGAY  480
SALFFLSRFR EALFHFSTLF DMLDMCVPRD IPERMLIERE IFGREAMNVI ACEGSERIER  540
PETYKQWQVR NRRAGLTQLP LNQEIMSIAK DRLHAYYHKD FVIDEDGRWL LQGWKGRIVY  600
ALSSWRAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein