PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010181.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 225aa MW: 24288.2 Da PI: 7.4939

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010181.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.1	8.3e-10	141	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ Rmu_sc0010181.1_g000004.1 141 GEKDCVHYMQTRTCKFGEGCKFDHP 165 7889********************8 PP
2	zf-CCCH	40	6.5e-13	181	204	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++C+F H+p Rmu_sc0010181.1_g000004.1 181 VICVYYLKTGTCKYGATCRFDHPP 204 68********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MASHLFTYGA AQSAPAPTPA LSTVYTPRSL AQSYLSDPTH RYLSGSDPLS TSSMYLAGTD 60 GLGAYSDAAR ATSYMMSSWP APDAEPGPPG FKRTSEALYH QALLGAHNPI GQMEAWYSTN 120 SLAKRPRFEN TSLPIYPQRP GEKDCVHYMQ TRTCKFGEGC KFDHPIWVPD GGIQDWKEGA 180 VICVYYLKTG TCKYGATCRF DHPPPGEVVA MAASQAKSDS TGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	5e-62	C3H family protein