PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010181.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 75aa MW: 8325.71 Da PI: 9.3377

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010181.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.4e-10	1	17	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 ++ G+CkyG++C+F+H+ Rmu_sc0010181.1_g000009.1 1 MKIGECKYGAQCRFHHP 17 899*************8 PP
2	zf-CCCH	41.4	2.4e-13	50	72	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ++++tGtCkyG++C+F H+ Rmu_sc0010181.1_g000009.1 50 VICVYYLKTGTCKYGATCRFDHP 72 68********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence
MKIGECKYGA QCRFHHPIDR PAVALSTTKL SQQENVKLTL AGLPRREGAV ICVYYLKTGT 60 CKYGATCRFD HPSPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-31	C3H family protein