PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010190.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 584aa MW: 66859.6 Da PI: 9.5181

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010190.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.5e-18	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl Rmu_sc0010190.1_g000009.1 21 RGPWTLEEDTLLIQYIARHGEGRWNLLANRAGLRRTGKSCRLRWLNYL 68 89********************************************97 PP
2	Myb_DNA-binding	53.3	6.2e-17	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Rmu_sc0010190.1_g000009.1 74 RGNLTPEEQLLILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MSSNTKSFSS SSSEDDNELR RGPWTLEEDT LLIQYIARHG EGRWNLLANR AGLRRTGKSC 60 RLRWLNYLKP DVKRGNLTPE EQLLILDLHS KWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ 120 KQAKHLKIDT DSTEFQNIIR CFWMPRLLQK IGDQNQLAAS HQHSITAPPS QPQFTEQGAV 180 DMSGFVYDLD IKKQNTECIL PSELPMESSN TSQFSDYYPS SSFGGAIVRN DHFVNNNSHD 240 MEVFNLGNSA AADTCYVPES ESNWLEIDFS CSMWNMDELL QRVFFNLSRP VRDLRSDCGV 300 GKLNNGVLRS DCGVGAGAAL RVEVGWNRSC FRIAATTIEF DGSRRSDWQG RGSSSFCSRR 360 RPTGSWPEVG RSWPEVGRNL SERLDSPPFR FVNMFTSRKK IHKDKDAEPT EFEESVAQSI 420 FDLENTNQEL KSDLKDLYIN SAALVDVAGN RKAVVIHVPY RLRKAYRKIH VRLVRELEKK 480 FSGKDVILIA TRRIVRPPKK GSAAQRPRTR TLTAVHEAIL EDVVLPAEIV GKRTRYRLDG 540 SKIMKVFLDP KERNNTEYKL ESFSAVYRKL SGKDVVFEYP ITEA

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MSSNTKSFSS SSSEDDNELR RGPWTLEEDT LLIQYIARHG EGRWNLLANR AGLRRTGKSC  60
RLRWLNYLKP DVKRGNLTPE EQLLILDLHS KWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ  120
KQAKHLKIDT DSTEFQNIIR CFWMPRLLQK IGDQNQLAAS HQHSITAPPS QPQFTEQGAV  180
DMSGFVYDLD IKKQNTECIL PSELPMESSN TSQFSDYYPS SSFGGAIVRN DHFVNNNSHD  240
MEVFNLGNSA AADTCYVPES ESNWLEIDFS CSMWNMDELL QRVFFNLSRP VRDLRSDCGV  300
GKLNNGVLRS DCGVGAGAAL RVEVGWNRSC FRIAATTIEF DGSRRSDWQG RGSSSFCSRR  360
RPTGSWPEVG RSWPEVGRNL SERLDSPPFR FVNMFTSRKK IHKDKDAEPT EFEESVAQSI  420
FDLENTNQEL KSDLKDLYIN SAALVDVAGN RKAVVIHVPY RLRKAYRKIH VRLVRELEKK  480
FSGKDVILIA TRRIVRPPKK GSAAQRPRTR TLTAVHEAIL EDVVLPAEIV GKRTRYRLDG  540
SKIMKVFLDP KERNNTEYKL ESFSAVYRKL SGKDVVFEYP ITEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	9e-77	MYB family protein