PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010513.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 500aa MW: 55826.6 Da PI: 5.1943

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010513.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.7	6.4e-25	7	80	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+ wyfFskrd+ky +g+r+nra++ g+Wkatg++ ++++++gel+g kk+L f kgr+++ kt+W mheyr+ Rmu_sc0010513.1_g000010.1 7 EDGWYFFSKRDRKYLNGTRPNRAARGGRWKATGSEVNIIDENGELIGHKKVLEFKKGRHKQDIKTEWKMHEYRI 80 679*********************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MFDIIREDGW YFFSKRDRKY LNGTRPNRAA RGGRWKATGS EVNIIDENGE LIGHKKVLEF 60 KKGRHKQDIK TEWKMHEYRI KDEKEDIPRP KRKKGEGNMQ LDIVLCKIYL NTRGNGNTDE 120 KDAVTTETSD QGIMVALTDA GTSHDNDISV LKQEVGQVQP LDSLLMMSSM QPQVHNNTTG 180 GFNNVDRISN SSTIADWFYS STSMNNGIMV TDTVTSHDED ISVLEHGPGQ LQPIGSSLMC 240 SLQPQVHTTG GFKNMDHISN SSTVPNICFY SSNSMNGIMV TDTVTFHDKD ISVLKQGAGQ 300 VQPLGSSLMC SLQPQVHNNT TGGFNNMYHI SNSSTITDNC FYSSTPMSNG VCDSTQRTHH 360 GGSMTNGASG SGYRRGSFTQ LHHQNYKNYS MSSEQMPSSS TWYPSEHPLQ YPTEIWTQSE 420 PENHEMPQVD DSTSVSLPAR YIEYESMLVN KEEADIMPVQ HANKDEADDD GLQFLSIPDE 480 VHKNDSKLAS FDDEINSGLD

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MFDIIREDGW YFFSKRDRKY LNGTRPNRAA RGGRWKATGS EVNIIDENGE LIGHKKVLEF  60
KKGRHKQDIK TEWKMHEYRI KDEKEDIPRP KRKKGEGNMQ LDIVLCKIYL NTRGNGNTDE  120
KDAVTTETSD QGIMVALTDA GTSHDNDISV LKQEVGQVQP LDSLLMMSSM QPQVHNNTTG  180
GFNNVDRISN SSTIADWFYS STSMNNGIMV TDTVTSHDED ISVLEHGPGQ LQPIGSSLMC  240
SLQPQVHTTG GFKNMDHISN SSTVPNICFY SSNSMNGIMV TDTVTFHDKD ISVLKQGAGQ  300
VQPLGSSLMC SLQPQVHNNT TGGFNNMYHI SNSSTITDNC FYSSTPMSNG VCDSTQRTHH  360
GGSMTNGASG SGYRRGSFTQ LHHQNYKNYS MSSEQMPSSS TWYPSEHPLQ YPTEIWTQSE  420
PENHEMPQVD DSTSVSLPAR YIEYESMLVN KEEADIMPVQ HANKDEADDD GLQFLSIPDE  480
VHKNDSKLAS FDDEINSGLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-27	NAC family protein