PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010535.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 219aa    MW: 24746.9 Da    PI: 9.3274
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010535.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.32e-19170218146
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvl 46 
                                ql++fw+ q   ie+a+dfkn++lPlarikki+ adedv+m+saeaPv+
  Rmu_sc0010535.1_g000012.1 170 QLQNFWSGQyqeIEQANDFKNRSLPLARIKKIMNADEDVRMVSAEAPVI 218
                                89****988888***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MGFRLPRIAN TKKADIPKGH FGVYVGESQK KRFVVPISYL NQPSFQDLLS QAEEEFGYHH  60
PMGGITIPCS QDTFLDVTFR LGLIVEGQNR QIGKVKRKVV EQNPEQTREN KQSDKRMDQQ  120
GHGHPTTMGV PGSAGQVSYG VNPYQPSQMM GLSPTGSHIH QQQQQQLQQQ LQNFWSGQYQ  180
EIEQANDFKN RSLPLARIKK IMNADEDVRM VSAEAPVIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-22NF-YC family protein