PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010734.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 475aa MW: 50039.7 Da PI: 7.8861

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010734.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.3	9.1e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+C yG+rC+++H++ Rmu_sc0010734.1_g000006.1 49 EADCSYYLRTGICGYGSRCRYNHPR 73 789********************96 PP
2	zf-CCCH	39.1	1.3e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Rmu_sc0010734.1_g000006.1 95 QPVCQYYMRTGTCKFGATCKYHHPK 119 689********************96 PP
3	zf-CCCH	36.7	7.2e-12	139	165	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+G++CkF+H++ Rmu_sc0010734.1_g000006.1 139 PGERECSYYVKTGQCKFGATCKFHHPQ 165 5789*********************97 PP
4	zf-CCCH	35.3	2e-11	301	325	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Ck+G++C+++H+ Rmu_sc0010734.1_g000006.1 301 GQSECQYYLRTGDCKFGSSCRYHHP 325 7899********************8 PP
5	zf-CCCH	35.6	1.6e-11	348	372	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Rmu_sc0010734.1_g000006.1 348 APLCTHYAQRGACKFGAACKFDHPM 372 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MERYGRNTEG TQSDPSPEWS GPGPETGLEE SMWQLGLGPG ESYPERPEEA DCSYYLRTGI 60 CGYGSRCRYN HPRDRTAVTG ALRAGAVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ 120 GGGSAAPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTGTQ SQVPSQAQAS 180 IIPAPTLYQT VQTPSVSSQP YGTVMVARPP LLPSSYVQSP YGPMLIPPGM VPFSGWSPYP 240 AGASPLASPS TQTAVGSGAL YGINQLSPSA PAYTGIFPTV PFSLGPPTSS QKEQSHPERP 300 GQSECQYYLR TGDCKFGSSC RYHHPAEVVA PNTPVVLSSI GLPSRPGAPL CTHYAQRGAC 360 KFGAACKFDH PMGTLSYSPS ASSLTDMPVA PYPVGSSIGT LAPSSSSSEL RPELNSGTSK 420 DSVSARMSSS LSTVSGSVGS TVSKDGVAHL GGQLSAQGSG PSTTSDNSTE CHSSS

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MERYGRNTEG TQSDPSPEWS GPGPETGLEE SMWQLGLGPG ESYPERPEEA DCSYYLRTGI  60
CGYGSRCRYN HPRDRTAVTG ALRAGAVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ  120
GGGSAAPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTGTQ SQVPSQAQAS  180
IIPAPTLYQT VQTPSVSSQP YGTVMVARPP LLPSSYVQSP YGPMLIPPGM VPFSGWSPYP  240
AGASPLASPS TQTAVGSGAL YGINQLSPSA PAYTGIFPTV PFSLGPPTSS QKEQSHPERP  300
GQSECQYYLR TGDCKFGSSC RYHHPAEVVA PNTPVVLSSI GLPSRPGAPL CTHYAQRGAC  360
KFGAACKFDH PMGTLSYSPS ASSLTDMPVA PYPVGSSIGT LAPSSSSSEL RPELNSGTSK  420
DSVSARMSSS LSTVSGSVGS TVSKDGVAHL GGQLSAQGSG PSTTSDNSTE CHSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-160	C3H family protein