PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0010871.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 438aa MW: 47088.1 Da PI: 6.5033

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0010871.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	328	365	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Rmu_sc0010871.1_g000003.1 328 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 365 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MAEEYQGGIC GGNWWSSASR HALVATSPCS VGFNDHMGSF GCPNDVDMIK SRSTCGGFGL 60 NSSSSTLPSD LNQALLLRSS SGRGESNFHN SMLQEEMGSF KQPMNNQDFP LDQSSSSTGF 120 PITSSPANNS YGGGFPSQLL QSLYDPEEVV VPQPQLQSLF NNGSSSMSYS SAESYGTLGS 180 NDLLSSPTSS TTCWPRYSPS CLRPSLQPRQ QQPRGGSSSG GGGGLHFSNI NTPFWNAPAA 240 ALNHDIRSTG LFPSLSQSQY TAPTAAIYDE HKPITSGNFT KPTTNEDVQD SSSSTVKKSG 300 SSFCSSTEPV FKRARIETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE 360 YIKFLHDQVG VLSTPYMKNG APMQHQQGCD KLKEAEQEGK HDLKSRGLCL VPISSTFPVA 420 NETTADFWTP TFGATSFR

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MAEEYQGGIC GGNWWSSASR HALVATSPCS VGFNDHMGSF GCPNDVDMIK SRSTCGGFGL  60
NSSSSTLPSD LNQALLLRSS SGRGESNFHN SMLQEEMGSF KQPMNNQDFP LDQSSSSTGF  120
PITSSPANNS YGGGFPSQLL QSLYDPEEVV VPQPQLQSLF NNGSSSMSYS SAESYGTLGS  180
NDLLSSPTSS TTCWPRYSPS CLRPSLQPRQ QQPRGGSSSG GGGGLHFSNI NTPFWNAPAA  240
ALNHDIRSTG LFPSLSQSQY TAPTAAIYDE HKPITSGNFT KPTTNEDVQD SSSSTVKKSG  300
SSFCSSTEPV FKRARIETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE  360
YIKFLHDQVG VLSTPYMKNG APMQHQQGCD KLKEAEQEGK HDLKSRGLCL VPISSTFPVA  420
NETTADFWTP TFGATSFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	6e-57	bHLH family protein