PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010871.1_g000026.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 217aa    MW: 24641.2 Da    PI: 4.7423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010871.1_g000026.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000395292455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               ++ ++Er+RR+++ +++ +Lr+l+ ka           +i+e  + YI +Lq
  Rmu_sc0010871.1_g000026.1 52 KNLKAERKRRAKLSDRLLKLRSLMNKA-----------TIVEDSITYIYELQ 92
                               56689*****************98665...........66666666666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MLVDHYLNDM EFVGSALDEL CLSPDQEGSS QQGRMGRRRY NDEEDDSIYK SKNLKAERKR  60
RAKLSDRLLK LRSLMNKATI VEDSITYIYE LQKNVNMLQD QLFEMEALSS LEVPEPKPRK  120
EEIDAAEEMK KYGIQAEVSV TQIDGNKLWI KAVLAKKRGG FTKLIEAMTE FGFELTDTSV  180
TTSNGAMLVS SCVIGFHCDT LAVEQTRELM LDIINGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-31bHLH family protein