PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010889.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 339aa    MW: 38637.3 Da    PI: 10.4644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010889.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.8e-0883128555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h ++Er RR++ +++++ L +llP+      +K +K  i+++A++ I++L+
  Rmu_sc0010889.1_g000004.1  83 HMINERMRREKQKQSYFALHSLLPNG-----TKSDKNWIVQMATRNIQQLE 128
                                7899********************97.....7*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MDRFILAALE GDSLWYENPP VLNPSAFVPY TEAPESGKPT NSGSNSMNMN KRMVRFLRKS  60
YPPSTARIEF GEKEHGKDKG FRHMINERMR REKQKQSYFA LHSLLPNGTK SDKNWIVQMA  120
TRNIQQLERQ KEELRKRNME LESILGKERS VKWRTTRLSV ANPTSGVDSM LEVLKCLKSL  180
GLKTRNIQSF FSPYEFSAEV EIESKIGATA LEAAMQETLY EVERKLLSSV PGSLQISGTT  240
AAHLEVFTSR SPEPARIDLT GHRKRPNRPP KKDPRSLAWF ATFQSTLHCH LLSIAEPIPR  300
LREPEKPSPE PAWKQPNRPP ESATPLNRRL PLQPLPSAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.14e-38bHLH family protein