PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010963.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 231aa    MW: 26713.1 Da    PI: 10.5031
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010963.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.92.5e-11174230160
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60 
                                +fY++Y+ ++GFsvr+ + +k+  n+ + + ++vCskeg++ +++   e ++  r  trt
  Rmu_sc0010963.1_g000005.1 174 NFYCDYGARMGFSVRIMQRRKT--NNVVRQVNYVCSKEGFKLDSDPL-EVKKVDRLDTRT 230
                                6****************98888..889*************9998876.566666666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MSPLRCHASP LHAAAILHRA TWPRCRQIQL PANYNNQNRN RYQTWPPFNH VRRITDRRNG  60
GVRSHHRKGP SSSYSTTTIV SDLRGTERDL SVQPKVEDPA IFPRPRLSLD TPPLLTISIP  120
SRAGMRRQRR RQEDDQEHSK TTDLGKDSMI VNRQASNNDD LYGLIVHSEE EAYNFYCDYG  180
ARMGFSVRIM QRRKTNNVVR QVNYVCSKEG FKLDSDPLEV KKVDRLDTRT G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131RRQRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.22e-08FAR1 family protein