PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011050.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 340aa    MW: 38024 Da    PI: 7.7613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011050.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-1780125147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Rmu_sc0011050.1_g000002.1  80 RGHWRPAEDSKLKELVAQFGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 125
                                899*****************************.***********996 PP
2Myb_DNA-binding54.23.4e-17132175146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                r +++++E+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Rmu_sc0011050.1_g000002.1 132 RRAFSEDEEERLLSAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 175
                                678*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MGPHQHHQMR SDSSYRPDLN FFPSQLCLSK TTFGVVANSE MGYGVHDRKN TMYLNLVGDE  60
SDHDDVIQTT AAGETKLCVR GHWRPAEDSK LKELVAQFGP QNWNLIAEHL DGRSGKSCRL  120
RWFNQLDPRI NRRAFSEDEE ERLLSAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARM  180
HREQSNVYKR RKPSSNSQAV IIPQHDHDHG QEDGAKNNAS SDRSTISINT SNDESGSAAS  240
ASTCTNLSLT PSNSPLLPSF FKNINPFQQH KIFGSQMGAG RIKGNENGQL SDSNSETSGD  300
ESVLTTYRTN SNNVSSMSRE AQSDKISVMP FIDFLGVGST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-72MYB family protein