PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011173.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 436aa    MW: 50246.9 Da    PI: 3.8023
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011173.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.92.8e-2161422127
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkya.....tgkrknr 76 
                                p+G+rFhPtdeel+ +yL+ k + ++ + + v++e+d+y ++ePw +       + ++++++fF+  +kk++      ++r++r
  Rmu_sc0011173.1_g000003.1   6 PVGVRFHPTDEELIGHYLHLKNNPNSATPSLVLSEFDLYgEAEPWIIWDahgGPNLKQQDLFFFTLLKKKANprgghASTRHSR 89 
                                89*******************99999777688*****99457*****63233333377899***99888877665553445555 PP

                        NAM  77 .atksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                                 + +sg+W++   +k+++    +++ +g k+ L + ++  p+ ++  W+m+ey+
  Rmu_sc0011173.1_g000003.1  90 rVGSSGTWSQGEPSKPIFGDknQETPIGRKTKLRYENKLVPE-QHGCWIMEEYT 142
                                4788**************97445555********99777777.899*******7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MDRCFPVGVR FHPTDEELIG HYLHLKNNPN SATPSLVLSE FDLYGEAEPW IIWDAHGGPN  60
LKQQDLFFFT LLKKKANPRG GHASTRHSRR VGSSGTWSQG EPSKPIFGDK NQETPIGRKT  120
KLRYENKLVP EQHGCWIMEE YTSVDDQSSC PAAHDHYAIC RLRENKTGQR RKSQDDDDHH  180
PKPRKKPKSL TVADPQPAFT TNEARKTVSL NQSPNPEQQF QNELIISDGD AQSSIGMPED  240
IDWLDLALED IDWLDLALED IDWLDLALED IDWLDLALED IDWLDLALED IDWLDLALED  300
IDWLDLALED IDWLDLALED IDWLDLALED IDWLDLALED IDWLDLALED IDWLDLALED  360
IDWLDLALED IDWLDLALED IDWLDLALED IDWLIGMPED IDWLDLALED IDWLDLALEE  420
VSPAPAQQQT FTFQLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189PRKKPKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-13NAC family protein