PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011258.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 627aa MW: 70356.8 Da PI: 4.5818

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011258.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.6	2e-39	8	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......................kvkaeek.ewyf 60 +p+G+rFhP+deel+++yL++k + k+ +++++i+e+d++k+eP++Lp+ +v+ +++ +wyf Rmu_sc0011258.1_g000002.1 8 VPKGYRFHPSDEELLSHYLEQKNKCKDSQITTIIPEIDVCKHEPRELPElaftraeslgrkfffffffwfarEVSWDNQgKWYF 91 589*************************999***********6689999999999999999877444444459* PP NAM 61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 F++rd ky++++r+nr+t +g+Wk tgkd+++++ +++++g k+tL+fyk pk++kt+Wv+hey l Rmu_sc0011258.1_g000002.1 92 FTPRDYKYNNSTRSNRTTGEGFWKITGKDRAIKAPgSKAVIGRKRTLTFYKRGVPKSQKTSWVIHEYYL 160 ******************************9666779************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MCCSGFTVPK GYRFHPSDEE LLSHYLEQKN KCKDSQITTI IPEIDVCKHE PRELPELAFT 60 RAESLGRKFF FFFFFWFARE VSWDNQGKWY FFTPRDYKYN NSTRSNRTTG EGFWKITGKD 120 RAIKAPGSKA VIGRKRTLTF YKRGVPKSQK TSWVIHEYYL IQAHSDPPKQ IGDFVVCCLK 180 YKSDNFDHDK DAPFCDRGSS SCSVASNVVN QAQENWASKE LVNVVPIPSG NDDEAETGGG 240 MITEEEEYLT LKELRDALQI PIGNPHEFEV QGTQTDPCPI DKNDLSTTVE GQPDRSNSSD 300 MIKELLDDPE NLDSLFLPPA PPQLHNSPTT VEGQPDRSNS SDMIKELLDD PENLDSLFHP 360 PAPPQLHNSP TTVEGQPDRS NSSDMIKELL DDPENLDSLF HPPAPPQLHN SPTTVEGQPD 420 RSNSSDMIKE LLDDPENLDS LFHQPAPPQL HNSPMYTTNV HNDECRKRTC PFDDNNPSLT 480 KKNIISTNDD DELVSNTACS SENQAANMIP EGYSQLGANL GSEFDSFLPN DYDYTLPSIN 540 RGLRDFSHDN NFIELDDLLS SYEGINSSLA QFLHTVIDGG RGVTSDRNTE VVHGSAVRLQ 600 GHCTAVYLPQ KKLKVLEADN SSKLAAI

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MCCSGFTVPK GYRFHPSDEE LLSHYLEQKN KCKDSQITTI IPEIDVCKHE PRELPELAFT  60
RAESLGRKFF FFFFFWFARE VSWDNQGKWY FFTPRDYKYN NSTRSNRTTG EGFWKITGKD  120
RAIKAPGSKA VIGRKRTLTF YKRGVPKSQK TSWVIHEYYL IQAHSDPPKQ IGDFVVCCLK  180
YKSDNFDHDK DAPFCDRGSS SCSVASNVVN QAQENWASKE LVNVVPIPSG NDDEAETGGG  240
MITEEEEYLT LKELRDALQI PIGNPHEFEV QGTQTDPCPI DKNDLSTTVE GQPDRSNSSD  300
MIKELLDDPE NLDSLFLPPA PPQLHNSPTT VEGQPDRSNS SDMIKELLDD PENLDSLFHP  360
PAPPQLHNSP TTVEGQPDRS NSSDMIKELL DDPENLDSLF HPPAPPQLHN SPTTVEGQPD  420
RSNSSDMIKE LLDDPENLDS LFHQPAPPQL HNSPMYTTNV HNDECRKRTC PFDDNNPSLT  480
KKNIISTNDD DELVSNTACS SENQAANMIP EGYSQLGANL GSEFDSFLPN DYDYTLPSIN  540
RGLRDFSHDN NFIELDDLLS SYEGINSSLA QFLHTVIDGG RGVTSDRNTE VVHGSAVRLQ  600
GHCTAVYLPQ KKLKVLEADN SSKLAAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-34	NAC family protein