PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011457.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 187aa    MW: 20445.8 Da    PI: 6.5087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011457.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS199.52.1e-61218724210
                       GRAS  24 LarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107
                                + +l++++s  g+p++Rl ay++e+L ar a+s+s+++kal+++e +   sse l+++++++ev+P++kf+++ aN aI ea++
  Rmu_sc0011457.1_g000001.1   2 MDELRQMVSVVGEPIERLGAYMLEGLIARRASSGSSICKALRCKEPA---SSELLSYMHILYEVCPYFKFGYMSANGAIAEAMK 82 
                                789*******************************************9...9********************************* PP

                       GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                                 e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l+ +g+rL+k+Ae ++vpfef++ +a +  d+
  Rmu_sc0011457.1_g000001.1  83 DENRVHIIDFQIGQGSQWLTLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLSIVGKRLSKLAEMFKVPFEFHA-AAMSGCDV 165
                                ******************************************888789999************************.8999**** PP

                       GRAS 190 eleeLrvkp.gEalaVnlvlql 210
                                +le+L vkp +Eala n++++l
  Rmu_sc0011457.1_g000001.1 166 QLENLGVKPgEEALAMNFAFML 187
                                *********999******9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MMDELRQMVS VVGEPIERLG AYMLEGLIAR RASSGSSICK ALRCKEPASS ELLSYMHILY  60
EVCPYFKFGY MSANGAIAEA MKDENRVHII DFQIGQGSQW LTLIQAFAAR PGGPPHIRIT  120
GIDDSMSAYA RGGGLSIVGK RLSKLAEMFK VPFEFHAAAM SGCDVQLENL GVKPGEEALA  180
MNFAFML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-103GRAS family protein