PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011538.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 173aa    MW: 18711.8 Da    PI: 6.2725
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011538.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.59.3e-5926123198
                      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk
  Rmu_sc0011538.1_g000009.1  26 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK 109
                                69********************************************************************************** PP

                      NF-YB  85 vylkkyrelegekk 98 
                                vyl+kyre+eg++k
  Rmu_sc0011538.1_g000009.1 110 VYLAKYREMEGDTK 123
                                ***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MAEGPASPGG GGSHDSGGEH SPRSNVREQD RYLPIANISR IMKKALPANG KIAKDAKETV  60
QECVSEFISF ITSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIDPLKV YLAKYREMEG  120
DTKGSGKGGE SSSKKEVQPS SIAQISHQGS FSQGASYSNS QTQQMMVPMQ GSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.18e-79NF-YB family protein