PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011792.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 352aa MW: 37488.4 Da PI: 8.1583

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011792.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.8e-18	47	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl Rmu_sc0011792.1_g000005.1 47 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 94 89****************************99**********97 PP
2	Myb_DNA-binding	46	1.2e-14	105	145	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Rmu_sc0011792.1_g000005.1 105 ADEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 145 79*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MRNPSSTSSS SKGKSSSSAA AAAAPKTAAV SSSSSKTPCC VKVGLKRGPW TPEEDELLAN 60 YIKKEGEGRW RTLPKRAGLL RCGKSCRLRW MNYLRPSVKR GQIAADEEDL ILRLHRLLGN 120 RWSLIAGRIP GRTDNEIKNY WNTHLSKKLI SQGIDPRTHK PLNPDTSSAD HAAVNNNGAA 180 ASSSKTNQHR GGTSSNPSPK SPITSSSPEE AAPSARENGY HVTNDDDLGA IVHGANGYGN 240 VMTSNDSNGS AAGMGGLRSN LLIGNEEDED MNCCTDDVFS SFLNSLINED PFAAAAAGQH 300 HSQPLQGMQH PNGIAPPADS SAQAFGGWES AVLMSSSFIQ NDSHRVNVDQ TQ

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MRNPSSTSSS SKGKSSSSAA AAAAPKTAAV SSSSSKTPCC VKVGLKRGPW TPEEDELLAN  60
YIKKEGEGRW RTLPKRAGLL RCGKSCRLRW MNYLRPSVKR GQIAADEEDL ILRLHRLLGN  120
RWSLIAGRIP GRTDNEIKNY WNTHLSKKLI SQGIDPRTHK PLNPDTSSAD HAAVNNNGAA  180
ASSSKTNQHR GGTSSNPSPK SPITSSSPEE AAPSARENGY HVTNDDDLGA IVHGANGYGN  240
VMTSNDSNGS AAGMGGLRSN LLIGNEEDED MNCCTDDVFS SFLNSLINED PFAAAAAGQH  300
HSQPLQGMQH PNGIAPPADS SAQAFGGWES AVLMSSSFIQ NDSHRVNVDQ TQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-79	MYB family protein