PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011974.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 260aa    MW: 29788.4 Da    PI: 10.2488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011974.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.8e-2014106199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ffkv       ++ rl++p +f+++  ++  ++ tl+l+ +s  sW+vk+  +k+++ +++++GW+eF + n ++egDf+vF++
  Rmu_sc0011974.1_g000002.1  14 FFKVI--LPGYSTERLMIPPPFLKHLRKDLCSKATLSLNMSSQCSWNVKV--TKTKKDVYFKDGWQEFLNNNSVDEGDFLVFTY 93 
                                77888..45556678********666555557779***************..******************************** PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                +g++ f   + vf++
  Rmu_sc0011974.1_g000002.1  94 EGKMHF--SIAVFDR 106
                                *99999..8888887 PP
2B338.81.6e-121672431494
                                T-EE--HHH.HTT..---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                         B3  14 grlvlpkkfaeeh..ggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                +  ++p +f +eh       ++ +  +   + g++W +vkl    + ++ +++kGW  F+++n++k+g +++F+l+++   ++v
  Rmu_sc0011974.1_g000002.1 167 CVYSIPTTFYREHlsA----GKYEFAFLKiSGGNKWyKVKL--VPSIRTAFMSKGWAAFASDNQIKVGHVCIFELVKE--NKMV 242
                                6779*********643....334566666255577758999..999999*************************9874..3345 PP

                                E CS
                         B3  94 v 94 
                                v
  Rmu_sc0011974.1_g000002.1 243 V 243
                                4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MVRKNGVKEK RPSFFKVILP GYSTERLMIP PPFLKHLRKD LCSKATLSLN MSSQCSWNVK  60
VTKTKKDVYF KDGWQEFLNN NSVDEGDFLV FTYEGKMHFS IAVFDRSCCG RVDFPNETFK  120
ESIVAMTTKR PSGRPRKDNS DNTAKESAIS FKSKFPHYKS TIKKTYCVYS IPTTFYREHL  180
SAGKYEFAFL KISGGNKWYK VKLVPSIRTA FMSKGWAAFA SDNQIKVGHV CIFELVKENK  240
MVVHNLTFSG NDQVQAINSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-19B3 family protein