PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0011976.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 150aa    MW: 16555 Da    PI: 4.906
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0011976.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-1531122196
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+ +l +s+v+ ++++++p k      ++  +s+ ++  +  g++We++++  ++ ++++ +  Wk Fv++n+Lk+gD +vF+l
  Rmu_sc0011976.1_g000004.1  31 FDIILAKSHVNPKCQMSIPSKLY-PLLLS--CSVPVV-LTFGGKTWEMTCNTANNAQKFFDRPSWKAFVDDNNLKVGDGCVFEL 110
                                6678899**************98.33333..665555.6679********99*******************************9 PP

                                -SSSEE..EEEE CS
                         B3  85 dgrsefelvvkv 96 
                                ++ s+++lv++v
  Rmu_sc0011976.1_g000004.1 111 TECSSTKLVFRV 122
                                866888777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MGDPASQSSS SDPTIELRGD EFWPLSGKPF FDIILAKSHV NPKCQMSIPS KLYPLLLSCS  60
VPVVLTFGGK TWEMTCNTAN NAQKFFDRPS WKAFVDDNNL KVGDGCVFEL TECSSTKLVF  120
RVQILRGEIP AQLLDKVSGE NAEKPLVILD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-10B3 family protein