PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011990.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

YABBY

Protein Properties

Length: 185aa MW: 21182.5 Da PI: 5.125

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011990.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	117.1	2.9e-36	23	131	67	169
YABBY 67 lkeelleelkveeenlksnvekeesastsvssekl......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasn 144 +++ +++k++e +++ +e + +++s ++ +++e +++ + v++PPekrqr+Psaynrfikeeiqr+ka+n Rmu_sc0011990.1_g000010.1 23 QLPPISQHEKDQEICVEEVEEVKYPGLGDMRSPSMavsnnsENEEYTNITLNHIVNKPPEKRQRAPSAYNRFIKEEIQRLKAEN 106 4455666666666666655555555555544444444432123333444445569*************************** PP YABBY 145 PdishreafsaaaknWahfPkihfg 169 P+++h+eafs+aaknWa fP++ ++ Rmu_sc0011990.1_g000010.1 107 PSMTHKEAFSTAAKNWAQFPPVQYK 131 *******************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MNVGECAMQQ FVKIGHSQMW SLQLPPISQH EKDQEICVEE VEEVKYPGLG DMRSPSMAVS 60 NNSENEEYTN ITLNHIVNKP PEKRQRAPSA YNRFIKEEIQ RLKAENPSMT HKEAFSTAAK 120 NWAQFPPVQY KIDGPDHGES SSQLAREDQN VTWNSDVTDQ VQEDGGVFRE RKAPRQSIWA 180 RTPIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	9e-40	YABBY family protein