PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0012046.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 257aa MW: 29757 Da PI: 9.2612

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0012046.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.1e-21	38	120	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fY++YAke GF+v+ +s+k+ ng i+++ +vCsk+g+++ + kk r+r+ tr++Cka+++v ++ gk+++t +++ Rmu_sc0012046.1_g000001.1 38 FYKSYAKESGFDVKSFTSEKK--NGVIVRKAYVCSKQGTSKVTGKK-----RNRNRTRVNCKARIVVVRRAtIGKYVITIFDEG 114 ***********99998887..9************998888.....999*******99888889******* PP FAR1 85 HnHela 90 H+H+l+ Rmu_sc0012046.1_g000001.1 115 HSHPLT 120 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MESQQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSFTSEKKNG 60 VIVRKAYVCS KQGTSKVTGK KRNRNRTRVN CKARIVVVRR ATIGKYVITI FDEGHSHPLT 120 TPRRKHLTKI HREVSSIHKS LTKQLTAVNV PTCTQFDFLG VHSGGVENIG CLQQDIYNYK 180 RDCRKEVKGH DGDMLHEYFL LEKEKDPSLI FKIEADNENM ITHIFWADAI CRRSYKFYGD 240 VVIFDTTYNT NMYSLIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	KRNRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-34	FAR1 family protein