PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012221.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 214aa    MW: 23668.4 Da    PI: 9.7258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012221.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-164290355
                        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               + GVr+++ +grWvAeI+d s+   + r +lg+f+ aeeAa a+++a++ l+g
  Rmu_sc0012221.1_g000010.1 42 FLGVRQRP-SGRWVAEIKDSSQ---NLRLWLGTFDRAEEAALAYDKAARVLRG 90
                               67******.7*********543...5***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MDSLQSSTPN QKETFHENKE SGCTSTRAIK VPKKAKINGR RFLGVRQRPS GRWVAEIKDS  60
SQNLRLWLGT FDRAEEAALA YDKAARVLRG RNAKTNFPSS HQQHGMNFMN IHEENCNILK  120
KNPRLYQLLQ HAIMKNHAAI ARSSSSSTII GSKGGQFDSN NNFDALVEET IVCSSSTSTA  180
SDVQDHDDYH CALSFGTSKV YSSVVVAPTF SATS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18ERF family protein