PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012235.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 190aa    MW: 21810.8 Da    PI: 8.2439
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012235.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.11.2e-326104199
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +Ca+C++ r kC++dC+lapyfp++ ++kf+n++k+FG s++ +ll++lp+++r++am+ ++ eA++r+ dPv G+++++++l+
  Rmu_sc0012235.1_g000005.1   6 SCASCRHNRSKCVRDCPLAPYFPSHMHQKFKNARKVFGESHLKQLLRSLPPHKRSTAMKHIIAEADIRVADPVGGSYRLVRNLE 89 
                                6*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallke 99 
                                 +++++++el +l++
  Rmu_sc0012235.1_g000005.1  90 LKIAEEEEELRRLRN 104
                                *********998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MNKYQSCASC RHNRSKCVRD CPLAPYFPSH MHQKFKNARK VFGESHLKQL LRSLPPHKRS  60
TAMKHIIAEA DIRVADPVGG SYRLVRNLEL KIAEEEEELR RLRNVLSVFR GGGSGSVVAQ  120
PLVQKQGYIV QEHDHINYQG YHIPVLPIVP GGFLHALLYH EQRNNMFDLR DEVVPEHDVN  180
PNQGEEECEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-21LBD family protein