PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012378.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 282aa    MW: 31935.7 Da    PI: 4.6412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012378.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-131461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  Rmu_sc0012378.1_g000001.1 14 RGPWTIEEDHKLMNFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYL 61
                               89******************************99************97 PP
2Myb_DNA-binding52.98.8e-1767110146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg++T+ E++++++++  lG++ W++Ia++++ gRt++++k++w++
  Rmu_sc0012378.1_g000001.1  67 RGAFTETEEDQIIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                                89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRVV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TETEEDQIIQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
VDSVSNKAID PKESMEDNKE IVTDISTELG QDNGLEPKLL QDDDNGNKGF EELSNEVELS  180
AFDETADVLE NYEMFCGSLD LGTFMLNQGV SNSSTISSNN TSATTTTTNS SISVEESNYN  240
PSISIGDRSL LQQNCLQQWV ESVDSMLSWD GFNNLEQDLF FF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-81MYB family protein