PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012471.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 866aa    MW: 95716.8 Da    PI: 9.7662
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012471.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-133794571198
                                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                +++    +p k a e+g +   s   tl  + gr+W+v l  ++  +++++ +GW++F++   L +g f+vF+++g+s+f  +v
  Rmu_sc0012471.1_g000008.1 379 TRQ---DIPLKSALEFGDE--LSNVATLIVPAGRVWQVDL--ERAHKTIWFVGGWQKFAEYYSLTDGQFLVFSYQGNSTF--HV 453
                                444...5999999999855..8889***************..**********************************9999..99 PP

                                EEE- CS
                         B3  95 kvfr 98 
                                ++f+
  Rmu_sc0012471.1_g000008.1 454 RIFD 457
                                9997 PP
2B335.12.3e-11612710299
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvF 82 
                                f v ++  +l s  +++p  f ++++    ++  +++ed+++  ++W +++ + + ++ +  ++kG  eF ++n+ k gD+++F
  Rmu_sc0012471.1_g000008.1 612 FAVILQQCNLDSYYMYVPTAFGRRYMRG--CPEYIKFEDSNSneKQWVIRCFFpSDTKVMRRIGKGCGEFFRDNNFKNGDVCLF 693
                                566666777778889**********755..7778****977767*******8785555566799******************** PP

                                EE-SSSEE..EEEEE-S CS
                         B3  83 kldgrsefelvvkvfrk 99 
                                +l++r++  l+++v+r+
  Rmu_sc0012471.1_g000008.1 694 ELIKRKDVVLKFSVLRN 710
                                ****9999999999886 PP
3B332.61.4e-10769861799
                                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                +++++ ++ + +p +f+++h +  ++ + l+  + +  +    ++y+    r+ +++G  eF+k+n+L+egD++vF+l++++  
  Rmu_sc0012471.1_g000008.1 769 RAHNMLNSFVHVPAEFVKDHLLGCANFINLKASSDKRGVPCTVCTYEPLHHRMEIRGGFGEFAKDNNLEEGDVCVFELIKSEAD 852
                                445555556899999999996555566566666544455555556888888899*************************99888 PP

                                ..EEEEE-S CS
                         B3  91 elvvkvfrk 99 
                                 l+v++f +
  Rmu_sc0012471.1_g000008.1 853 ALKVSIFHA 861
                                89**99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    
MEVGGVAGCL WLLRAKHLVF DGGGSNLSQV VDIGLDLGAI GGSSSSSCSA TFNRHQYFIK  60
TPQITTPKSL APLQCQKTSF QGLSLGEAKR GVSESFVAEN VSSTTVRRGR LLGIVARTAG  120
AAKTIEAEVD KPLGLTLGQK PGGGVTITAV EGGGNAAKAG LKAGDQVIYT SSFFGDELWP  180
ADKLGFTKTA INAKPDNVYF VVSRGGAEVD VKRLPKRPAP PRFGRKLTES QKARATHICL  240
DCGFIYTLSK PFDEQPESYV CPQCRAPKKR FAGYDVNTGK PIGGGLPPIG VIIGLVAGVA  300
AKAYASSAHT QTWVTSAERE EVRRPRGQQQ GETEAATASR PAWGCFDLDL GAASGRADAT  360
ERQDDAGGRR KIRVGSDETR QDIPLKSALE FGDELSNVAT LIVPAGRVWQ VDLERAHKTI  420
WFVGGWQKFA EYYSLTDGQF LVFSYQGNST FHVRIFDFSC CEIEYPCVGH SIKHEEDVED  480
DVCGTLPSPS KGKGKCVDQH VKRKRKSVAI AKRFEDDVYK TLPSSSKGKG KDQHVKRNRK  540
SVAIAKRFKR AKLKVQRMPS SQEFPTRKKK YKEIFVKNIA AYTYPNCKMT IAKEQQKVIH  600
ATKMFNLENP FFAVILQQCN LDSYYMYVPT AFGRRYMRGC PEYIKFEDSN SNEKQWVIRC  660
FFPSDTKVMR RIGKGCGEFF RDNNFKNGDV CLFELIKRKD VVLKFSVLRN AEYAVRVGGK  720
NKNPKIHDCG TLYFSKKIKE LVLSRETKKA MKAAGALKIE NPAFMVILRA HNMLNSFVHV  780
PAEFVKDHLL GCANFINLKA SSDKRGVPCT VCTYEPLHHR MEIRGGFGEF AKDNNLEEGD  840
VCVFELIKSE ADALKVSIFH ASDYAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1502531KRKRKSVAIAKRFEDDVYKTLPSSSKGKGK
2503532KRKRKSVAIAKRFEDDVYKTLPSSSKGKGK
3536572KRNRKSVAIAKRFKRAKLKVQRMPSSQEFPTRKKKYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-42B3 family protein