PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012670.1_g000016.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 190aa    MW: 21613.2 Da    PI: 9.9379
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012670.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.6e-2086147157
                                TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                r++R+++t+eq+  Leel+++  ++p+a+++++ A++l    +++ ++V++WFqN+Ra+e++
  Rmu_sc0012670.1_g000016.1  86 RSSRWSPTPEQIMHLEELYRSgIKTPTAQQIRQVAARLrnygRVEGKNVFYWFQNHRARERQ 147
                                689*****************99**************************************97 PP
2Wus_type_Homeobox110.21.1e-3587148364
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                ++RW+PtpeQi+ Leely+sG++tP++++i++++a+L++yG++e+kNVfyWFQN++aRerqk
  Rmu_sc0012670.1_g000016.1  87 SSRWSPTPEQIMHLEELYRSGIKTPTAQQIRQVAARLRNYGRVEGKNVFYWFQNHRARERQK 148
                                79***********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MMGSSGGCRD PNSRALPEYY SIKAAYPQPA VLLTPNLGCT SNMTQIPLLP FNHHHQIVPA  60
TLNEQGRNSS ECFYSDKQPA AAASPRSSRW SPTPEQIMHL EELYRSGIKT PTAQQIRQVA  120
ARLRNYGRVE GKNVFYWFQN HRARERQKTR RDELMSMYQS DIKQQQQQQQ TLTNNTISSL  180
RDKESAGGTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-25WOX family protein