PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0012775.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 576aa MW: 63628.1 Da PI: 9.605

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0012775.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	1e-07	9	42	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 rW t++++ll+ av ++G+++W+++a+++ Rt Rmu_sc0012775.1_g000003.1 9 SRWGTWLELLLAGAVIRYGTRDWNLVAAELR-ART 42 69****************************9.888 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MVAEVIGESR WGTWLELLLA GAVIRYGTRD WNLVAAELRA RTVCPYAFTP EVCKAKYEDL 60 QKRYSGCKVW FEELRKKRME ELRQALKQSE NSIGSLESKL ESLKAEKGQG GCINYGSGQT 120 ESPVPSQKSE GHYPCGKEIC KDEPSAGSFT CEALTSCSPE CQIPATVSAE DTETKREVSQ 180 SFKHEKISIG AFYGGLGGTL RKRRGKRKRK DCSRDVKEAS VGDSGFLDSA DAITALRCIE 240 HSTSECREDL GSSGAGDWQR GLTKDGTNKL LDVFNKFLEH KSASVFRHRL DSQKRRRYKK 300 MIRRHMDFDT IGSRIASHSV MSVKELFRDL LLLANNALVF YSKSTREYKS ALLLRDLTTK 360 TLQQHLKDSS SKATSANLSS NTLVCNPPVK PRSARPGNQK LSRKATNAGK AAAKTSNKSK 420 KTGNANADSS PSVQSFAVTK RTSGHQRKVG RKTVGQQNVK ASLLIASNAD CGFHPSCLSP 480 NLKQNDHSDN IFLSHQRAKE ACPRNGGKAL QQPMAETYCW PCKVAVGLVL VEIAGSHGCC 540 CLRFFISCSC VDHTGEEFLD HKVMDQSRSG QHQEHP

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MVAEVIGESR WGTWLELLLA GAVIRYGTRD WNLVAAELRA RTVCPYAFTP EVCKAKYEDL  60
QKRYSGCKVW FEELRKKRME ELRQALKQSE NSIGSLESKL ESLKAEKGQG GCINYGSGQT  120
ESPVPSQKSE GHYPCGKEIC KDEPSAGSFT CEALTSCSPE CQIPATVSAE DTETKREVSQ  180
SFKHEKISIG AFYGGLGGTL RKRRGKRKRK DCSRDVKEAS VGDSGFLDSA DAITALRCIE  240
HSTSECREDL GSSGAGDWQR GLTKDGTNKL LDVFNKFLEH KSASVFRHRL DSQKRRRYKK  300
MIRRHMDFDT IGSRIASHSV MSVKELFRDL LLLANNALVF YSKSTREYKS ALLLRDLTTK  360
TLQQHLKDSS SKATSANLSS NTLVCNPPVK PRSARPGNQK LSRKATNAGK AAAKTSNKSK  420
KTGNANADSS PSVQSFAVTK RTSGHQRKVG RKTVGQQNVK ASLLIASNAD CGFHPSCLSP  480
NLKQNDHSDN IFLSHQRAKE ACPRNGGKAL QQPMAETYCW PCKVAVGLVL VEIAGSHGCC  540
CLRFFISCSC VDHTGEEFLD HKVMDQSRSG QHQEHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	211	RKRRGKRKRKD
2	203	213	RKRRGKRKRKD
3	293	300	QKRRRYKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	1e-21	MYB_related family protein