PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012909.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 208aa    MW: 23437.7 Da    PI: 9.6513
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012909.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1858112256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ ++tkeq + Lee F+++++++ +++e LA +l+L  rqV vWFqNrRa+ k
  Rmu_sc0012909.1_g000002.1  58 RKKLRLTKEQSRLLEESFRQHHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 112
                                78889************************************************98 PP
2HD-ZIP_I/II118.34.3e-3858146189
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++ev
  Rmu_sc0012909.1_g000002.1  58 RKKLRLTKEQSRLLEESFRQHHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREV 141
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLre 89 
                                eeLr+
  Rmu_sc0012909.1_g000002.1 142 EELRA 146
                                ***94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MASLELTMSV PGFSSYPSLP SSVRDLDINQ VPLAQRPDQE EILEDEEDSS NGSGGPPRKK  60
LRLTKEQSRL LEESFRQHHT LNPRQKEALA LQLKLRPRQV EVWFQNRRAR SKLKQTEMEC  120
EYLKRWFGSL TEQNRRLQRE VEELRAMKVG PPTVISPHTC EPLPASTLTM CPRCERVTTT  180
STTTGPAKTK ISAAANTALS SKVATPAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-76HD-ZIP family protein