PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013419.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 457aa MW: 48890.8 Da PI: 9.1096

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013419.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	252	274	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C + Fs++ L H++ H Rmu_sc0013419.1_g000004.1 252 FKCNFCQRKFSTSQALGGHQNAH 274 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MRTTTAQPLP AKQPPPPVQP PTCPTSPAPP THEPQSRLES IQLTCRCVKT LISLPTPTSR 60 PGRDSRSRIR SMRTTTAQPL PAKQPPPPVQ PPTCPTSPAP PTHEPQSRLE SIQLTCRCLK 120 TLISLPTPTS HPGRDSRSVA SEVPPSPSSL PKEGGDGDDK SNMKMKEKVI VLIDEPQQSL 180 EKEKEAAVGG STSSGVVHDM TPSNQGPPGG SNLELALFNS SSSQLVPEVV EVEEGSDENP 240 AARDQKKEPR VFKCNFCQRK FSTSQALGGH QNAHKQERQL AKRRSQAFDH MGGLGHSHFP 300 YYSPYSGFST HSLYGSYNRS SLGVRMDSMI HKPSYTPWSQ TYGRFGLALG GAASGLGGGA 360 SGWSRPGSSL INSIDQHRLT SLQGLQNNIN ELGLAGRTAT APRFEQGSTS GLQNFGGSNL 420 SALNNRVPPT NGADLLRQAE PPQCDTDGAG LDLSLKL

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MRTTTAQPLP AKQPPPPVQP PTCPTSPAPP THEPQSRLES IQLTCRCVKT LISLPTPTSR  60
PGRDSRSRIR SMRTTTAQPL PAKQPPPPVQ PPTCPTSPAP PTHEPQSRLE SIQLTCRCLK  120
TLISLPTPTS HPGRDSRSVA SEVPPSPSSL PKEGGDGDDK SNMKMKEKVI VLIDEPQQSL  180
EKEKEAAVGG STSSGVVHDM TPSNQGPPGG SNLELALFNS SSSQLVPEVV EVEEGSDENP  240
AARDQKKEPR VFKCNFCQRK FSTSQALGGH QNAHKQERQL AKRRSQAFDH MGGLGHSHFP  300
YYSPYSGFST HSLYGSYNRS SLGVRMDSMI HKPSYTPWSQ TYGRFGLALG GAASGLGGGA  360
SGWSRPGSSL INSIDQHRLT SLQGLQNNIN ELGLAGRTAT APRFEQGSTS GLQNFGGSNL  420
SALNNRVPPT NGADLLRQAE PPQCDTDGAG LDLSLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-21	C2H2 family protein