PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0014619.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 110aa    MW: 12715.8 Da    PI: 9.9855
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0014619.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.53.6e-2771072100
                     DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilkl 83 
                                C++C++ r kC +dC lapyfpa+ ++k++ ++++FG   ++kllk+l   +++r++a++ +  eA++r  dPv G++gv+++ 
  Rmu_sc0014619.1_g000001.1   7 CSSCRHNRIKCDPDCWLAPYFPAHMHQKYKKAQQVFGKIYMTKLLKSLhqTPNKRSTAIKNIRAEADIRSADPVGGCYGVVKEQ 90 
                                **********************************************99666788****************************** PP

                     DUF260  84 qqqleqlkaelallkee 100
                                   +++l+ e+a ++ee
  Rmu_sc0014619.1_g000001.1  91 CAVIRRLEREIAGQEEE 107
                                *********99988776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    
MKNPQTCSSC RHNRIKCDPD CWLAPYFPAH MHQKYKKAQQ VFGKIYMTKL LKSLHQTPNK  60
RSTAIKNIRA EADIRSADPV GGCYGVVKEQ CAVIRRLERE IAGQEEELRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-24LBD family protein